Week 44#


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File explanation.md#

Creation of the file _explanation.md_ to make a detail of the process followed. Its detail:

  • Each step with instructions and recommendations, how install the extensions for each part of the process, etc.

  • The version of the soft and the extensions used.

  • The documentation of the soft and the extensions used.

  • The files of the soft and extensions (versions indicated). For that its was delete the gitlab project indicated in the last report, and it was created a folder where those files are allocated /idiap/group/biosignal/projects/aifmd/progress_lucas/soft_and_extensions.

I think in order to do a full documentation its missing some information about the theory behind the extensions. This part is in process.

Folder progress_lucas#

Creation of the folder _progress_lucas_ in: /idiap/group/biosignal/projects/aifmd/progress_lucas/. There are in this folder the next elements:

  • File _explanation.md_.

  • Folder results.

In this last folder there are other 4 folders. Each represent the results of each artery (2 patients -> 4 arteries). Those results were obtained following the process indicated. Patients are identify like 000343, so RA_000343 mins right artery patient 00343.

Python and Modules in 3DSlicer#

In order to automatize the process, its possible to create in some nearly future things like:

  • A script of python with the propose of run the last two parts of the process automatically in the environment of 3dslicer (this soft have an extension for work with py).

  • A script of python for all the process using the extensions independently like functions.

  • A module, like an extension in 3DSlicer with all the functions, so install the extension and she guide us to obtain the results.

I started to read about those ideas, take time the docs about that its not to clear.

Technical Characteristics of DICOM dataset#

Here is possible to find the official documentation of DICOM dataset files, in order to understand its technical characteristics and the defined standards .

Some questions#

  • There is a standard to name files in the medical environment?

  • There is a limitation on terms of weight of files to put in the directory of idiap?

  • There is a standard for write this type of explanation files?

  • There is a protocol for backup files in the directory of idiap?